Home > Bio Information > SNP Analysis Software
 
SNP Parsing & Upload
Combine the blast engine and data mining technology
that developed by ISTECH Co. LTD.
Then extract the detailed information of SNP
from the sequence data and upload them to Local DB.
Input Data
- Gene Symbol
- Flanking Sequence
- Allele
- Genotype
Output Result
- dbSNP #rs ID
- Position of SNP on chromosome
- Position of SNP on gene/RNA/protein
- Amino acid change code
- OMIM No
- Gene structure
Search & Filtering
Able to search target SNP that is related to diseases
by using the various search conditions
Search condition
- Search by disease
- Search by gene
- Search by SNP ID
Contents
- Gene structure
- RNA/protein/SNP annotation
Able to extract the SNP in promoter domain and SNP
that affects protein coding by using the various search conditions.
Filtering option
- Database (Local DB and/or dbSNP)
- Variation type (SNP/IND/MIC)
- Genomic location
(Exon/Intron/Splice/Promoter)
- Function (Non-Synon/Synon/UTR)
- Genotype (Yes/No)
- Validation
- OMIM No (Yes/No)
- Allele frequency (Major/Minor)
Navigation

Able to confirm the mapped SNP in gene structure visually and conduct research at the same time.
In SNPWizard¢â, the user is able to perform the navigation by using 3 types of independent JAVA application and also since individuals are linked with gene structure, dielectrics, sequence and SNP etc, the user is able to enlarge, shrink and move the selected area.
Navigator Type
- Gene navigator
- Genome Navigator
- Sequence Navigator
Saving as text and/or image file

ISTECH Co. Ltd has enabled the user to save the dielectric information such as extracted SNP annotation information and gene structure in text file.
It is also able to create gene structure in image form by
applying Microsoft PowerPoint¢â OLE technology.
Exported Information
- Disease related genes
- Gene structure
- SNP annotation
- Individual genotype
- Reference sequence


 

 
Trigger SNPAnalyzer

In SNPWizard¢â, the user is able to use SNPAnalyzer, which is Linkage Disequilibrium analysis program developed by our company directly without login process.

Analysis
- Hardy-Weinberg Equilibrium Test
- Linkage Disequilibrium Calculation
- Haplotype Estimation
- QTL Analysis

User & Data management
Users and data store management
SNPWizard¢â is using 3 steps to secure the uploaded data and users access setup.

User management
- Administrator
- Private user
- Public user
Data security level
- 0 : Private
- 1 : Institute public
- 2 : Public