Home > Bio Information > SNP Analysis Software
 
 
SNPAnalyzer-Pro Release Note

Release Note







SNPAnalyzer-Pro¢â Version 1.5 (2007/05/30)

  • Data Import
    Affymetrix GeneChip¢ç CHP / CEL
  • Preprocess
    Sample Class Specification
  • Cross Tabulation Analysis
    SNP permutation Test
    FDR ( False Posititve Rate )
    Fisher's Exact P-value


  • Reading old Version Project File






SNPAnalyzer-Pro¢â Version 1.0 (2007/07/02)

SNPAnalyzer-Pro¢â v1.0 is a professional software that performs SNP-specific analysis. The analyzable data size is more than 500000 SNPs and 2000 samples. Especially, because whole analysis processes are interconnected with user-friendly GUI, users can deduce more confident and abundant analysis results. Automatic extraction of statistics of analysis results and biological annotation for SNPs and genes make SNPAnalyzer-Pro¢â the best suited software for both the genome-wide study and the target gene-based study.
  • Data Import
    Affymetrix GeneChip¢ç Genotype Series
    ABI - TaqMan¢ç SNP Genotyping Assays
    500K SNP / 2000 Samples

  • Preprocess
    Missing Data Imputation
    Call Rate / Allele Frequency
    Hardy-Weinberg Equilibrium Test

  • Cross Tabulation Analysis
    Goodness of Fit Test / Likelihood Ratio Test
    OR / AR / PAR
    Genetic Model : Additive / CoDominant / Dominant / Recessive / OverDominant
    SNP Analysis / Haplotype Analysis

  • Classification Analysis
    Logistic Regression
    Parameter Estimation / Classification Table
    Test Model : Additive / CoDominant / Dominant / Recessive / OverDominant
    SNP Analysis / Haplotype Analysis

  • LD Analysis
    Haplotype Estimation with EM / PL-EM Algorithm
    Calculate LD Indices between Pairwise SNPs - D', R2, LOD, p-value, Four-Gamete
    Estimate Tagging SNPs
    Construct LD Blocks with Gabriel¡¯s Method
    Estimate Crossover Rate / Multi-Allelic D'

  • Biological Annotation
    SNP Annotation / Gene Annotation
    Extracted From Cross Tabulation Analysis / LD Analysis

Download

SNPAnalyzer-Pro¢â Trial version Download

Users can freely download and test SNPAnalyzer-Pro¢â for one week. Below is the executable environment.
  • Hardware
    CPU : Pentium4, 2.4GHz or higher
    RAM : 1GB or higher (2GB recommended)
    Storage : Min. 1GB for installation

  • Operating System
    Microsoft Windows 2000/XP with Internet
    J2SE Runtime Environment 5.0 or higher

    • [Download]